TOPOLINK

A package to evaluate structural models using chemical crosslinking distance constraints.

Institute of Chemistry
University of Campinas

TopoLink:
Home
Download
Usage
Tools
XLFF
See also:
Dalton MS lab
SIM-XL
G-score
LovoAlign
Packmol
MDLovoFit
Group software page
The TANGO project
Home Download
TopoLink is FREE software. It can be used, copied and distributed according to the General Public License v3.0. In order to keep our motivation in developing and distributing the package, please cite:
A. J. R. Ferrari, M. A. Clasen, L. Kurt, P. C. Carvalho, F. C. Gozzo, L Martínez
TopoLink: Evaluation structural models using chemical crosslinking distance constraints.
Bioinformatics, 35(17), 3169-3170, 2019. [LINK]
Windows 10 (64 bits) version with graphical user interface:
Download the zip file, extract it and execute the TopolinkUI_Installer:

[GUI - Installer - ZIP file]

(for all features, PyMol must be installed)


The graphical user interface is developed by the PatternLab for Proteomics group: PatternLab


[Click to enlarge]
Standalone executable for Windows 10 (64 bits) (for command-line use)

Download the executable from here: [topolink.exe Win10-x86_64]

Save the executable and add the path to it in your PATH environment variable. The package is run from the command prompt as indicated in the user guide.

Multi-platform source code for command line use

Download the latest version of the package from this site. To compile it, first, you need a Fortran compiler. The GNU Fortran Compiler, gfortran, is available in standard repositories of every GNU-Linux distribution.

If you have a Fortran compiler installed, do:
tar -xzf topolink-{version}.tar.gz
cd topolink/src
make
This procedure will create the executable topolink in the directory topolink/bin. The most practical way to use it is to add this directory to your path.

Go to the Usage page for instructions on how to use the software.

GIT repository: https://gibhub.com/m3g/topolink

All version
FileDescription
topolink-19.156.tar.gz Released on Jun 05, 2019 - [change log at github]